Programmed longevity, youthspan, and juventology – lifespans and Healthspan

Volter Longo has some interesting new ideas regarding how we look at life expectancy, lifespan. He recommends thinking about spans in terms of youthspan (peak health 20-60) and Healthspan (oriented to disease free stage and the older phase (65-120).

check – Longo VD. Programmed longevity, youthspan, and juventology. Aging Cell. 2019;18:e12843. https://doi.org/10.1111/acel.12843 

also check David Sinclair’s new book Lifespan: Why We Age―and Why We Don’t Have To — is a really great book! Highly recommended …. packed with information … some should be taken with a grain of salt or maybe with a Sirtuin activator like NMN 🙂

 

 

The Mediterranean Diet and Nutritional Adequacy: A Review.

Castro-Quezada, I., Román-Viñas, B., & Serra-Majem, L. (2014). The Mediterranean Diet and Nutritional Adequacy: A Review. Nutrients.

Interesting … the claims

The Mediterranean dietary pattern, through a healthy profile of fat intake, low proportion of carbohydrate, low glycemic index, high content of dietary fiber, antioxidant compounds, and anti-inflammatory effects, reduces the risk of certain pathologies, such as cancer or Cardiovascular Disease (CVD).

The inclusion of foods typical of the Mediterranean diet and greater adherence to this healthy pattern was related to a better nutrient profile, both in children and adults, with a lower prevalence of individuals showing inadequate intakes of micronutrients.

We’ll be reviewing this and related studies in the overall evaluation …

later …

 

Towards an Open Research Knowledge Graph – One must chuckle

One must chuckle … I was looking at Towards an Open Research Knowledge Graph by
Sören Auer & Sanjeet Mann

It’s behind a paywall …

Can we please not use the phrase Open Anything unless its actually open and available without a paywall 🙂

 

 

 

Watson for Oncology (WFO) – more details

Back to Watson for Oncology (WFO). … so today was deep dive day to look at what papers were written specifically re WFO.

So,  on Sunday, June 23, 2019, using Google Scholar … the list below is of  the main useful things I could find.

Conclusions:

  • Shows promise
  • Not ready for solo flight (i.e. needs clinicians to work with it).
  • Benefits from adding diagnostic tests liken GEA (Gene expression assays)
  • Keep working on improving WFO, and understand specifics better.

 

Literature I looked at, will look at it again in more detail, and provide further insights.

  1. Choi, Y. I., Chung, J. W., Kim, K. O., Kwon, K. A., Kim, Y. J., Park, D. K., … & Sung, K. H. (2019). Concordance Rate between Clinicians and Watson for Oncology among Patients with Advanced Gastric Cancer: Early, Real-World Experience in Korea. Canadian Journal of Gastroenterology and Hepatology, 2019.
  2. Kim, Y. Y., Oh, S. J., Chun, Y. S., Lee, W. K., & Park, H. K. (2018). Gene expression assay and Watson for Oncology for optimization of treatment in ER-positive, HER2-negative breast cancer. PloS one, 13(7), e0200100.
  3. Schmidt, C. (2017). MD Anderson breaks with IBM Watson, raising questions about artificial intelligence in oncology. JNCI: Journal of the National Cancer Institute, 109(5).
  4. Zhang, X. C., Zhou, N., Zhang, C. T., Lv, H. Y., Li, T. J., Zhu, J. J., … & Liu, G. (2017). 544P Concordance study between IBM Watson for Oncology (WFO) and clinical practice for breast and lung cancer patients in China. Annals of Oncology, 28(suppl_10), mdx678-001.
  5. Zou, F., Liu, C. Y., Liu, X. H., Tang, Y. F., Ma, J. A., & Hu, C. H. (2018). Concordance Study between IBM Watson for Oncology and Real Clinical Practice for Cervical Cancer Patients in China: A Retrospective Analysis. Available at SSRN 3287513.
  6. Somashekhar, S. P., Sepúlveda, M. J., Puglielli, S., Norden, A. D., Shortliffe, E. H., Rohit Kumar, C., … & Ramya, Y. (2018). Watson for Oncology and breast cancer treatment recommendations: agreement with an expert multidisciplinary tumor board. Annals of Oncology, 29(2), 418-423.
  7. Somashekhar, S. P., Sepúlveda, M. J., Norden, A. D., Rauthan, A., Arun, K., Patil, P., … & Kumar, R. C. (2017). Early experience with IBM Watson for Oncology (WFO) cognitive computing system for lung and colorectal cancer treatment.
  8. Somashekhar, S. P., Kumarc, R., Rauthan, A., Arun, K. R., Patil, P., & Ramya, Y. E. (2017). Abstract S6-07: Double blinded validation study to assess performance of IBM artificial intelligence platform, Watson for oncology in comparison with Manipal multidisciplinary tumour board–First study of 638 breast cancer cases.
  9. Liu, C., Liu, X., Wu, F., Xie, M., Feng, Y., & Hu, C. (2018). Using artificial intelligence (Watson for oncology) for treatment recommendations amongst Chinese patients with lung cancer: Feasibility study. Journal of medical Internet research, 20(9), e11087.
  10. Ross, C., & Swetlitz, I. (2017). IBM pitched its Watson supercomputer as a revolution in cancer care. It’s nowhere close. STAT News.
  11. Zauderer, M. G., Gucalp, A., Epstein, A. S., Seidman, A. D., Caroline, A., Granovsky, S., … & Petri, J. (2014). Piloting IBM Watson Oncology within Memorial Sloan Kettering’s regional network.
  12. Herath, D. H., Wilson-Ing, D., Ramos, E., & Morstyn, G. (2016). Assessing the natural language processing capabilities of IBM Watson for oncology using real Australian lung cancer cases.
  13. Bach, P., Zauderer, M. G., Gucalp, A., Epstein, A. S., Norton, L., Seidman, A. D., … & Keesing, J. (2013). Beyond Jeopardy!: Harnessing IBM’s Watson to improve oncology decision making.
  14. Kris, M. G., Gucalp, A., Epstein, A. S., Seidman, A. D., Fu, J., Keesing, J., … & Setnes, M. (2015). Assessing the performance of Watson for oncology, a decision support system, using actual contemporary clinical cases.

486 Verbs account for 90% of occurrences

Interesting

looking at citations’ meaningfulness  in Tahamtan, Iman, and Lutz Bornmann. “What Do Citation Counts Measure? An Updated Review of Studies on Citations in Scientific Documents Published between 2006 and 2018.” arXiv preprint arXiv:1906.04588 (2019).

Bertin and Atanassova (2014) showed that in the introduction section, “70 verbs account for 50% of all verb occurrences, and 486 verbs account for 90% of the occurrences”.

Lots and lots of insights and data here ….

 

note to self. – follow up and look at related work

 

Did IBM Watson Overpromise on AI Health Care?

Eliza Strickland has an opinion 

IBM Watson’s foundations  certainly had and still have a lot of promise!  Perhaps a more thorough ‘lessons learned’  is on order.

(web article states  article appears in the April 2019 print issue as “IBM Watson, Heal Thyself.”)

Swoogle Semantic Search Engine

OK … just filing this for future reference – Swoogle2007  a Semantic Web Search … kinda concerning that itS got 2007 in its title …  According to its about page,

Swoogle (http://swoogle.umbc.edu/) is a specialized web search engine that discovers, analyzes and indexes knowledge encoded in semantic web documents published on the Web. Swoogle reasons about these documents and their constituent parts (e.g., terms, individuals, triples) and records meaningful metadata about them. Swoogle provides webscale semantic web data access service, which helps human users and software systems to find relevant documents, terms and triples, via its search and navigation services.

there’s more. its blog has an entry on Knowledge Graph Fact Prediction via Knowledge-Enriched Tensor Factorization (here), and suggests related entries

 

 

OK .. we’ll save this for later. Interesting!